pylabrobot.thermocycling.opentrons.OpentronsThermocyclerModuleV1#

class pylabrobot.thermocycling.opentrons.OpentronsThermocyclerModuleV1(name: str, opentrons_id: str, child_location: Coordinate = Coordinate(x=0, y=0, z=0), child: ItemizedResource | None = None, backend: OpentronsThermocyclerBackend | None = None, **_ignored)#

Bases: Thermocycler, OTModule

Opentrons Thermocycler GEN1/V1 wrapper.

Dimensions (closed-lid): 172 mm (x) x 316 mm (y) x 154 mm (z).

Attributes

name

Get the name of this resource.

resource

setup_finished

Methods

__init__(name, opentrons_id[, ...])

Args: name: Human-readable name.

assign_child_resource(resource[, location, ...])

Assign a child resource to this resource.

at(location)

Return a copy of this resource at the given location.

center([x, y, z])

Get the center of this resource.

centers([xn, yn, zn])

Get equally spaced points in the x, y, and z directions.

close_lid()

Close the thermocycler lid.

copy()

deactivate_block()

Turn off the block heater.

deactivate_lid()

Turn off the lid heater.

deregister_did_assign_resource_callback(callback)

Remove a callback that will be called after a resource is assigned to this resource.

deregister_did_unassign_resource_callback(...)

Remove a callback that will be called after a resource is unassigned from this resource.

deregister_state_update_callback(callback)

Remove a callback that will be called when the state of the resource changes.

deregister_will_assign_resource_callback(...)

Remove a callback that will be called before a resource is assigned to this resource.

deregister_will_unassign_resource_callback(...)

Remove a callback that will be called before a resource is unassigned from this resource.

deserialize(data[, allow_marshal])

Deserialize a resource from a dictionary.

get_absolute_location([x, y, z])

Get the absolute location of this resource, probably within the pylabrobot.resources.Deck.

get_absolute_rotation()

Get the absolute rotation of this resource.

get_absolute_size_x()

Get the absolute size in the x direction.

get_absolute_size_y()

Get the absolute size in the y direction.

get_absolute_size_z()

Get the absolute size in the z direction.

get_all_children()

Recursively get all children of this resource.

get_anchor([x, y, z])

Get a relative location within the resource.

get_block_current_temperature()

Get the current block temperature (°C).

get_block_target_temperature()

Get the block's target temperature (°C).

get_current_cycle_index()

Get the one-based index of the current cycle.

get_current_step_index()

Get the one-based index of the current step.

get_default_child_location(resource)

get_highest_known_point()

Recursively finds the highest known point in absolute space.

get_hold_time()

Get remaining hold time (s) for the current step.

get_lid_current_temperature()

Get the current lid temperature (°C).

get_lid_status()

Get whether the lid is "open" or "closed".

get_lid_target_temperature()

Get the lid's target temperature (°C), if supported.

get_resource(name)

Get a resource by name.

get_root()

Get the root of the resource tree.

get_size_x()

Local size in the x direction.

get_size_y()

Local size in the y direction.

get_size_z()

Local size in the z direction.

get_total_cycle_count()

Get the total number of cycles.

get_total_step_count()

Get the total number of steps in the current cycle.

is_in_subtree_of(other)

Return True if self is in the subtree rooted at other.

is_profile_running()

Return True if a profile is still in progress.

load_all_state(state)

Load state for this resource and all children.

load_from_json_file(json_file)

Loads resources from a JSON file.

load_state(state)

Load state for this resource only.

load_state_from_file(fn)

Load the state of this resource and all children from a JSON file.

open_lid()

Open the thermocycler lid.

register_did_assign_resource_callback(callback)

Add a callback that will be called after a resource is assigned to this resource.

register_did_unassign_resource_callback(callback)

Add a callback that will be called after a resource is unassigned from this resource.

register_state_update_callback(callback)

Register a callback that will be called when the state of the resource changes.

register_will_assign_resource_callback(callback)

Add a callback that will be called before a resource is assigned to this resource.

register_will_unassign_resource_callback(...)

Add a callback that will be called before a resource is unassigned from this resource.

rotate([x, y, z])

Rotate counter-clockwise by the given number of degrees.

rotated([x, y, z])

Return a copy of this resource rotated by the given number of degrees.

run_pcr_profile(denaturation_temp, ...[, ...])

Run a PCR profile with specified parameters.

run_profile(profile, block_max_volume)

Enqueue a multi-step temperature profile (fire-and-forget).

save(fn[, indent])

Save a resource to a JSON file.

save_state_to_file(fn[, indent])

Save the state of this resource and all children to a JSON file.

serialize()

Return a serialized representation of the thermocycler.

serialize_all_state()

Serialize the state of this resource and all children.

serialize_state()

Serialize the state of this resource only.

set_block_temperature(temperature)

Set the block temperature.

set_lid_temperature(temperature)

Set the lid temperature.

setup(**backend_kwargs)

stop()

unassign()

Unassign this resource from its parent.

unassign_child_resource(resource)

Unassign a child resource from this resource.

wait_for_block([timeout, tolerance])

Wait until block temp reaches target ± tolerance.

wait_for_lid([timeout, tolerance])

Wait until lid temp reaches target ± tolerance, or status is idle/holding at target.

wait_for_profile_completion([poll_interval])

Block until the profile finishes, polling at poll_interval seconds.
Parameters: