pylabrobot.liquid_handling.liquid_handler.LiquidHandler#
- class pylabrobot.liquid_handling.liquid_handler.LiquidHandler(backend: LiquidHandlerBackend, deck: Deck)#
-
Front end for liquid handlers.
This class is the front end for liquid handlers; it provides a high-level interface for interacting with liquid handlers. In the background, this class uses the low-level backend ( defined in
pyhamilton.liquid_handling.backends) to communicate with the liquid handler.Attributes
Get the name of this resource.
Methods
__init__(backend, deck)Initialize a LiquidHandler.
aspirate(resources, vols[, use_channels, ...])Aspirate liquid from the specified wells.
aspirate96(resource, volume[, offset, ...])Aspirate from all wells in a plate or from a container of a sufficient size.
assign_child_resource(resource, location[, ...])Not implement on LiquidHandler, since the deck is managed by the
deckattribute.center([x, y, z])Get the center of this resource.
centers([xn, yn, zn])Get equally spaced points in the x, y, and z directions.
Clear the state of the liquid handler head.
copy()deregister_did_assign_resource_callback(callback)Remove a callback that will be called after a resource is assigned to this resource.
Remove a callback that will be called after a resource is unassigned from this resource.
deregister_state_update_callback(callback)Remove a callback that will be called when the state of the resource changes.
Remove a callback that will be called before a resource is assigned to this resource.
Remove a callback that will be called before a resource is unassigned from this resource.
deserialize(data[, allow_marshal])Deserialize a liquid handler from a dictionary.
discard_tips([use_channels, ...])Permanently discard tips in the trash.
discard_tips96([allow_nonzero_volume])Permanently discard tips from the 96 head in the trash.
dispense(resources, vols[, use_channels, ...])Dispense liquid to the specified channels.
dispense96(resource, volume[, offset, ...])Dispense to all wells in a plate.
drop_resource(destination[, offset, direction])drop_tips(tip_spots[, use_channels, ...])Drop tips to a resource.
drop_tips96(resource[, offset, ...])Drop tips using the 96 head.
get_absolute_location([x, y, z])Get the absolute location of this resource, probably within the
pylabrobot.resources.Deck.Get the absolute rotation of this resource.
Get the absolute size in the x direction.
Get the absolute size in the y direction.
Get the absolute size in the z direction.
Recursively get all children of this resource.
get_anchor(x, y, z)Get a relative location within the resource.
Recursively finds the highest known point in absolute space.
get_resource(name)Get a resource by name.
get_root()Get the root of the resource tree.
Local size in the x direction.
Local size in the y direction.
Local size in the z direction.
load(path)Load a liquid handler from a file.
load_all_state(state)Load state for this resource and all children.
load_from_json_file(json_file)Loads resources from a JSON file.
load_state(state)Load the liquid handler state from a file.
Load the state of this resource and all children from a JSON file.
move_channel_x(channel, x)Move channel to absolute x position
move_channel_y(channel, y)Move channel to absolute y position
move_channel_z(channel, z)Move channel to absolute z position
move_lid(lid, to[, intermediate_locations, ...])Move a lid to a new location.
move_plate(plate, to[, ...])Move a plate to a new location.
move_resource(resource, to[, ...])Move a resource to a new location.
pick_up_resource(resource[, offset, ...])pick_up_tips(tip_spots[, use_channels, offsets])Pick up tips from a resource.
pick_up_tips96(tip_rack[, offset])Pick up tips using the 96 head.
prepare_for_manual_channel_operation(channel)register_callback(method_name, callback)Registers a callback for a specific method.
register_did_assign_resource_callback(callback)Add a callback that will be called after a resource is assigned to this resource.
register_did_unassign_resource_callback(callback)Add a callback that will be called after a resource is unassigned from this resource.
register_state_update_callback(callback)Register a callback that will be called when the state of the resource changes.
register_will_assign_resource_callback(callback)Add a callback that will be called before a resource is assigned to this resource.
Add a callback that will be called before a resource is unassigned from this resource.
return_tips([use_channels, allow_nonzero_volume])Return all tips that are currently picked up to their original place.
return_tips96([allow_nonzero_volume])Return the tips on the 96 head to the tip rack where they were picked up.
rotate([x, y, z])Rotate counter-clockwise by the given number of degrees.
rotated([x, y, z])Return a copy of this resource rotated by the given number of degrees.
save(fn[, indent])Save a resource to a JSON file.
save_state_to_file(fn[, indent])Save the state of this resource and all children to a JSON file.
Serialize this resource.
Serialize the state of this resource and all children.
Serialize the state of this liquid handler.
setup(**backend_kwargs)Prepare the robot for use.
stamp(source, target, volume[, ...])Stamp (aspiration and dispense) one plate onto another.
stop()summary()Prints a string summary of the deck layout.
transfer(source, targets[, source_vol, ...])Transfer liquid from one well to another.
unassign()Unassign this resource from its parent.
unassign_child_resource(resource)Unassign a child resource from this resource.
update_head_state(state)Update the state of the liquid handler head.
use_channels(channels)Temporarily use the specified channels as a default argument to
use_channels.- Parameters:
backend (LiquidHandlerBackend)
deck (Deck)